Genomic Variation in Vitis Vinifera, from Extant to Contemporary Varieties
Yazarlar (8)
Zeki Kaya University Of California, Davis, Amerika Birleşik Devletleri
Dr. Öğr. Üyesi Funda ÖZDEMİR DEĞİRMENCİ Kırşehir Ahi Evran Üniversitesi, Türkiye
Sevgi Yorulmaz Middle East Technical University (Metu), Türkiye
Kıvılcım B. Vural Middle East Technical University (Metu), Türkiye
Christina Luke Koç University, Türkiye
Christopher H. Roosevelt Koç University, Türkiye
Mehmet Somel Middle East Technical University (Metu), Türkiye
David B. Neale University Of California, Davis, Amerika Birleşik Devletleri
| Makale Türü | Özgün Makale (SSCI, AHCI, SCI, SCI-Exp dergilerinde yayınlanan tam makale) | ||
| Dergi Adı | Plant Molecular Biology Reporter (Q3) | ||
| Dergi ISSN | 0735-9640 Wos Dergi Scopus Dergi | ||
| Dergi Tarandığı Indeksler | SCI-Expanded | ||
| Makale Dili | İngilizce | Basım Tarihi | 05-2025 |
| Cilt / Sayı / Sayfa | 43 / 3 / 1588–1604 | DOI | 10.1007/s11105-025-01573-7 |
| Makale Linki | https://doi.org/10.1007/s11105-025-01573-7 | ||
| Özet |
| Ancient DNA (aDNA) of 3500-year-old charred grapevine (Vitis vinifera) seed material excavated from the archaeological site of Kaymakçı, Gölmarmara, Türkiye, was subjected to whole genome shotgun sequencing using next-generation sequencing (NGS) technology. After grapevine DNA sequence data was filtered by quality scores and the grapevine DNA file was aligned with the two reference grapevine genomes (Pinot Noir-clone ENTAV115 and PN40024), 44 consensus mapped (CMap) ancient DNA sequences common to both reference genomes were obtained. Majority of these sequences (63.6%) were specific to the nuclear genome while 20.5% and 15.9% were specific to chloroplast and mitochondria genomes, respectively. Thus, 57.1%, 42.8%, and 100% of the CMap DNA sequences were related to previously identified genes in the grapevine nuclear, mitochondria, and chloroplast DNA genomes … |
| Anahtar Kelimeler |
| Ancient DNA | Ancient grape | Genetic differences | Kaymakçı | Vitis Vinifera |
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| Atıf Sayıları | |
| Google Scholar | 1 |
| Scopus | 1 |
| Web of Science | 1 |