Characterization of genetic diversity in Turkish common bean gene pool using phenotypic and whole-genome DArTseq-generated silicoDArT marker information
Yazarlar (13)
Doç. Dr. Muhammad Azhar Nadeem Bolu Abant İzzet Baysal Üniversitesi, Türkiye
Ephrem Habyarimana Consiglio Per La Ricerca İn Agricoltura E L’Analisi Dell’Economia Agraria (Crea), İtalya
Prof. Dr. Vahdettin Çiftçi Bolu Abant İzzet Baysal Üniversitesi, Türkiye
Muhammad Amjad Nawaz Chonnam National University, Güney Kore
Tolga Karaköy Cumhuriyet Üniversitesi, Türkiye
Gonul Comertpay Eastern Mediterranean Agricultural Research Institute, Türkiye
Muhammad Qasim Shahid
South China Agricultural University, Çin
South China Agricultural University, Çin
Prof. Dr. Rüştü HATİPOĞLU Çukurova Üniversitesi, Türkiye
Doç. Dr. Mehmet Zahit Yeken Bolu Abant İzzet Baysal Üniversitesi, Türkiye
Fawad Ali Bolu Abant İzzet Baysal Üniversitesi, Türkiye
Prof. Dr. Sezai Ercişli Atatürk Üniversitesi, Türkiye
Gyuhwa Chung
Chonnam National University, Güney Kore
Chonnam National University, Güney Kore
Faheem Shehzad Baloch
Bolu Abant İzzet Baysal Üniversitesi, Türkiye
Bolu Abant İzzet Baysal Üniversitesi, Türkiye
| Makale Türü |
Özgün Makale
(SSCI, AHCI, SCI, SCI-Exp dergilerinde yayınlanan tam makale)
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| Dergi Adı | Plos One (Q1) | ||
| Dergi ISSN | 1932-6203 Dergi Bilgileri (2018) | ||
| Dergi Tarandığı Indeksler | SCI-Expanded | ||
| Makale Dili | İngilizce | Basım Tarihi | 10-2018 |
| Cilt / Sayı / Sayfa | 13 / 10 / 1–28 | DOI | 10.1371/journal.pone.0205363 |
| UAK Araştırma Alanları |
Çayır-Mera ve Yem Bitkileri
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| Özet |
| Turkey presents a great diversity of common bean landraces in farmers’ fields. We collected 183 common bean accessions from 19 different Turkish geographic regions and 5 scarlet runner bean accessions to investigate their genetic diversity and population structure using phenotypic information (growth habit, and seed weight, flower color, bracteole shape and size, pod shape and leaf shape and color), geographic provenance and 12,557 silicoDArT markers. A total of 24.14% markers were found novel. For the entire population (188 accessions), the expected heterozygosity was 0.078 and overall gene diversity, Fst and Fis were 0.14, 0.55 and 1, respectively. Using marker information, model-based structure, principal coordinate analysis (PCoA) and unweighted pair-group method with arithmetic means (UPGMA) algorithms clustered the 188 accessions into two main populations A (predominant) and B, and 5 unclassified genotypes, representing 3 meaningful heterotic groups for breeding purposes. Phenotypic information clearly distinguished these populations; population A and B, respectively, were bigger (>40g/100 seeds) and smaller (<40g/100 seeds) seed-sized. The unclassified population was pure and only contained climbing genotypes with 100 seed weight 2–3 times greater than populations A and B. Clustering was mainly based on A: seed weight, B: growth habit, C: geographical provinces and D: flower color. Mean kinship was generally low, but population B was more diverse than population A. Overall, a useful level of gene and genotypic diversity was observed in this work and can be used by the scientific community in breeding … |
| Anahtar Kelimeler |
BM Sürdürülebilir Kalkınma Amaçları
| Atıf Sayıları | |
| Web of Science | 66 |
| Google Scholar | 101 |